All Recent Publications

154 publications found:

2007

Blanton ML, and JL Specker. 2007. "The Hypothalamic-Pituitary-Thyroid (HPT) Axis in Fish and Its Role in Fish Development and Reproduction." Critical Reviews in Toxicology 37(1-2):97-115. doi:10.1080/10408440601123529
Johnson GE, JW Beeman, I Duran, and A Puls. 2007. Synthesis of Juvenile Salmonid Passage Studies at The Dalles Dam, Volume II, 2001-05. PNNL-16443, Pacific Northwest National Laboratory, Richland, WA.
Lee C, DJ Schwab, D Beletsky, J Stroud, and BM Lesht. 2007. "Numerical modeling of mixed sediment resuspension, transport, and deposition during the March 1998 episodic events in southern Lake Michigan ." Journal of Geophysical Research. C. (Oceans) 112(C2):C02018. doi:10.1029/2005JC003419
Roesijadi G, S Rezvankhah, DM Binninger, and H Weissbach. 2007. "Ecdysone Induction of MsrA Protects Against Oxidative Stress in Drosophila." Biochemical and Biophysical Research Communications 354(2):511-516.
Schultz IR, SM Reed, AV Pratt, and AD Skillman. 2007. "Quantitative oral dosing of water soluble and lipophilic contaminants in the Japanese medaka (Oryzias latipes)." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145(1):86-95.
Vavrinec J, III, NP Kohn, KD Hall, and BA Romano. 2007. Effects of burial by the disposal of dredged materials from the Columbia River on Pacific razor clams (Siliqua patula). PNNL-16350, Pacific Northwest National Laboratory, Richland, WA.
Vavrinec J, III, WH Pearson, NP Kohn, JR Skalski, C Lee, KD Hall, BA Romano, MC Miller, and TP Khangaonkar. 2007. Laboratory Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Material from the Columbia River. PNNL-16482, Pacific Northwest National Laboratory, Richland, WA.
Brandenberger JM, CW May, VI Cullinan, RK Johnston, DE Leisle, B Beckwith, G Sherrell, D Mettallo, and R Pingree. 2007. "Contaminant Concentrations in Storm Water Entering the Sinclair/Dyes Inlet Subasin of the Puget Sound, USA, During Storm Event and Baseflow Conditions." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26�29, 2007, p. 9 pages. Puget Sound Action Team, Olympia, WA.
Cullinan VI, CW May, JM Brandenberger, C Judd, and RK Johnston. 2007. "Development of An Empirical Water Quality Model for Stormwater Based on Watershed Land Use in Puget Sound." In 2007 Georgia Basin Puget Sound Research Conference, Vancouver, British Columbia, March 26�29, 2007, p. 8 pages. Puget Sound Action Team, Olympia, WA.
Frick WE, TP Khangaonkar, AC Sigleo, and Z Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74(1-2):1-11. doi:10.1016/j.ecss.2007.02.019
Fritz BG, NP Kohn, TJ Gilmore, D McFarland, EV Arntzen, RD Mackley, GW Patton, DP Mendoza, and AL Bunn. 2007. Investigation of the Hyporheic Zone at the 300 Area,Hanford Site . PNNL-16805, Pacific Northwest National Laboratory, Richland, WA.
Johnson GE, AB Borde, E Dawley, HL Diefenderfer, BD Ebberts, DA Putman, GC Roegner, RM Thom, J Vavrinec, III, and AH Whiting. 2007. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006. PNNL-16561, Pacific Northwest National Laboratory, Richland, WA.
Johnson GE, and HL Diefenderfer. 2007. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY07 Annual Report . PNNL-16947, Pacific Northwest National Laboratory, Richland, WA.
Johnson GE, F Khan, JR Skalski, CL Rakowski, MC Richmond, and JA Serkowski. 2007. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Spillway, 2006. PNNL-16458, Pacific Northwest National Laboratory, Richland, WA.
Moline MA, DL Woodruff, and NR Evans. 2007. "Optical Delineation of Benthic Habitat Using an Autonomous Underwater Vehicle." Journal of Field Robotics 24(6):461-471. doi:10.1002/rob.20176
Richmond MC, Z Deng, GR Guensch, H Tritico, and WH Pearson. 2007. "Mean Flow and Turbulence Characteristics of a Full-Scale Spiral Corrugated Culvert with Implications to Fish Passage." Ecological Engineering 30(4):333-340. doi:10.1016/j.ecoleng.2007.04.011
Rohay AC, MD Sweeney, DC Hartshorn, RE Clayton, and JL Devary. 2007. Third Quater Seismic Report for Fiscal Year 2007. PNNL-16872, Pacific Northwest National Laboratory, Richland, WA.
Woodruff DL, SS Southard, VI Cullinan, NP Kohn, MG Anderson, and J Vavrinec, III. 2007. Third Annual Report: 2006 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation. PNNL-15678-3, Pacific Northwest National Laboratory, Richland, WA.

2006

Anderson JW, and RF Lee. 2006. "Use of Biomarkers in Oil Spill Risk Assessment in the marine environment." Human and Ecological Risk Assessment 12(6):1192-1222.
Diefenderfer HL, GC Roegner, RM Thom, AH Whiting, AB Borde, EM Dawley, GE Johnson, JR Skalski, J Vavrinec, III, and BD Ebberts. 2006. Standard Monitoring Protocols and Methods to Assess Restoration of Salmon Habitat in the Lower Columbia River and estuary . PNNL-15793, Pacific Northwest National Laboratory, Richland, WA.
Diefenderfer HL, RM Thom, AB Borde, GC Roegner, AH Whiting, GE Johnson, E Dawley, JR Skalski, J Vavrinec, III, and BD Ebberts. 2006. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2005. PNNL-15934, Pacific Northwest National Laboratory, Richland, WA.
Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of fall Chinook salmon embryos, alevin, and fry exposed to variable thermal and dissolved oxygen regimes." Transactions of the American Fisheries Society 135(6):1462-1477.
Geist DR, CS Abernethy, KD Hand, VI Cullinan, JA Chandler, and P Groves. 2006. "Survival, development, and growth of Snake River fall Chinook salmon Embryos, Alevins, and Fry Exposed to Variable Thermal and Dissolved Oxygen Regimes." Transactions of the American Fisheries Society 135(6):1462-1477. doi:10.1577/T05-294.1
Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Gene expression patterns in Rainbow Trout, Oncorhynchus mykiss, exposed to a suite of model toxicants." Aquatic Toxicology 77(4):372-385. doi:10.1016/j.aquatox.2006.01.007
Huesemann MH. 2006. "Can Advances in Science and Technology Prevent Global Warming? A Critical Review of Limitations and Challenges." Mitigation and Adaptation Strategies for Global Change 11:539-577.
Johnson GE, and DD Dauble. 2006. "Surface Flow Outlets to Protect Juvenile Salmonids Passing through Hydropower Dams." Reviews in Fisheries Science 14(3):213-244.
Johnson GE. 2006. Facilitation of the Estuary/Ocean Subgroup for Research, Monitoring, and Evaluation, FY06 Annual Report. PNNL-16142, Pacific Northwest National Laboratory, Richland, WA.
Pearson WH, NP Kohn, and JR Skalski. 2006. Entrainment of Dungeness Crab in the Desdemona Shoals Reach of the Lower Columbia River Navigation Channel. PNNL-16139, Pacific Northwest National Laboratory, Richland, WA.
Schultz IR, and RE Shangraw. 2006. "Effect of Short-Term Drinking Water Exposure to Dichloroacetate on its Pharmacokinetics and Oral Bioavailability in Human Volunteers: A Stable Isotope Study." Toxicological Sciences 92(1):42-50.
Cook CB, B Dibrani, JA Serkowski, MC Richmond, PS Titzler, and GW Dennis. 2006. Acoustic Doppler Current Profiler Measurements in the Tailrace at John Day Dam. PNNL-15627, Pacific Northwest National Laboratory, Richland, WA.
Greene R, and EA Crecelius. 2006. "Total and Inorganic Arsenic in Mid-Atlantic Marine Fish and Shellfish and Implications for Fish Advisories." Integrated Environmental Assessment and Management 2(4):344-354. doi:10.1897/1551-3793(2006)2[344:TAIAIM]2.0.CO;2
Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Dose-Response Relationships in Gene Expression Profiles in Rainbow Trout, Onorhyncus mykiss Exposed to Ethynylestradiol ." Marine Environmental Research 62(suppl.):S151-S155. doi:10.1016/j.marenvres.2006.04.056
Hook SE, AD Skillman, JA Small, and IR Schultz. 2006. "Temporal Changes in Gene Expression in Rainbow Trout Exposed to Ethynyl Estradiol ." Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 145(1):73-85. doi:doi:10.1016/j.cbpc.2006.10.011
Huesemann MH, TJ Fortman, RG Riley, CJ Thompson, Z Wang, MJ Truex, and BM Peyton. 2006. "Slow Desorption of Phenanthrene from Silica Particles: Influence of Pore Size, Pore Water, and Aging Time." In 20th Annual International Conference on Soils, Sediments, and Water: Successes and Challenges published in CONTAMINATED SOILS SEDIMENTS AND WATER, 2006, vol. 10, ed. Calabrase, E. J.; Kostecki, P. T.; Dragun, J., pp. 1-24. Springer, New York, NY.
Johnson GE, F Khan, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, JA Serkowski, and JR Skalski. 2006. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam Sluiceway, 2005. PNNL-15540, Pacific Northwest National Laboratory, Richland, WA.
Kedderis GL, AR Elmore, EA Crecelius, JW Yager, and TL Goldsworthy. 2006. "Kinetics of Arsenic Methylation by Freshly Isolated B6C3F1 Mouse Hepatocytes." Chemico-Biological Interactions 161(2):139-145.
Khangaonkar TP, SA Breithaupt, and FC Kristanovich. 2006. "Restoration of Hydrodynamic and Hydrologic Processes in the Chinook River Estuary, Washington � Feasibility Assessment ." In Estaurine and Coastal Modeling Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, ed. M.L. Spaulding, pp. 734-751. American Society of Civil Engineers, Reston, VA.
Kim J, WL Hayton, and IR Schultz. 2006. "Modeling the brain-pituitary-gonad axis in salmon." Marine Environmental Research 62(Supplement):S426-S432.
Kohn NP, JM Brandenberger, LA Niewolny, and RK Johnston. 2006. Organics Verification Study for Sinclair and Dyes Inlets, Washington. PNNL-16070, Pacific Northwest National Laboratory, Richland, WA.
Lee C, Z Yang, TP Khangaonkar, and AB Divers. 2006. "Application of a Hydrodynamic Model for Assessing the Hydraulic Capacity and Flow Field at Willamette Falls Dam, Oregon." In Estuarine and Coastal Modeling. Proceedings of 9th International Conference held in Charleston, SC, Oct.31-Nov. 2, 2005, ed. M.L. Spaulding, pp. 788-805. American Society of Civil Engineers, Reston, VA.
Muirhead EK, AD Skillman, SE Hook, and IR Schultz. 2006. "Oral Exposure of PBDE-47 in Fish: Toxicokinetics and Reproductive Effects in Japanese Medaka (Oryzias latipes) and Fathead Minnows (Pimephales promelas)." Environmental Science and Technology 40(2):523-528.
Nichols JW, IR Schultz, and PN Fitzsimmons. 2006. "In vitro-in vivo extrapolation of quantitative hepatic biotransformation data for fish - I. A review of methods, and strategies for incorporating intrinsic clearance estimates into chemical kinetic models." Aquatic Toxicology 78(1):74-90.
Pearson WH, JR Skalski, KL Sobocinski, MC Miller, GE Johnson, GD Williams, JA Southard, and RA Buchanan. 2006. A Study of Stranding of Juvenile Salmon by Ship Wakes Along the Lower Columbia River Using a Before-and-After Design: Before-Phase Results. PNNL-15400, Pacific Northwest National Laboratory, Richland, WA.
Pearson WH, MC Miller, GD Williams, NP Kohn, and JR Skalski. 2006. Preliminary Assessment of Potential Impacts to Dungeness Crabs from Disposal of Dredged Materials from the Columbia River. PNNL-15477, Pacific Northwest National Laboratory, Richland, WA.
Ploskey GR, GE Johnson, MA Weiland, F Khan, RP Mueller, JA Serkowski, CL Rakowski, J Hedgepeth, JR Skalski, BD Ebberts, and BA Klatte. 2006. "Acoustic Camera Evaluation of Juvenile Salmonid Approach and Fate at Surface Flow Outlets of Two Hydropower Dams ." In HydroVision 2006, p. 13 pages. HCI Publications, Kansas City, MO.
Steinmaus KL, J Bowles, DL Woodruff, T Donato, WJ Rhea, WA Snyder, DR Korwan, LM Miller, GM Petrie, AR Maxwell, and LF Hibler. 2006. "Evolution of a Man-Made Plume in Coastal Waters." Eos 87(51):581-592.
Whelan G, WD Millard, GM Gelston, MA Pelton, Z Yang, DL Strenge, C Lee, C Sivaraman, MJ Simpson, JK Young, TP Khangaonkar, TR Downing, BL Hoopes, and LE Hachmeister. 2006. Rapid Risk Assessment: FY05 Annual Summary Report. PNNL-15697, Pacific Northwest National Laboratory, Richland, WA.
Yang Z, H Liu, and TP Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling: Proceedings of the 9th International Conference held in Charleston, SC, Oct. 31-Nov.2, 2005, ed. M.L. Spaulding, pp. 752-767. American Society of Civil Engineers, Reston, VA.

2005

Anderson JW, SI Hartwell, and MJ Hameedi. 2005. "Regional Comparisons of Coastal Sediment Contamination Detected by a Biomarker (P450 HRGS; EPA Method 4425)." Environmental Science and Technology 39(1):17-23.
Diefenderfer HL, C Roegner, RM Thom, EM Dawley, AH Whiting, GE Johnson, KL Sobocinski, MG Anderson, and B Ebberts. 2005. Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2004. PNNL-15102, Pacific Northwest National Laboratory, Richland, WA.
Diefenderfer HL, RM Thom, and K Hofseth. 2005. "A Framework for Risk Analysis for Ecological Restoration Projects in the U.S. Army Corps of Engineers ." Chapter 4 in Economics and Ecological Risk Assessment: Applications to Watershed Management, Environmental and Ecological Risk Assessment Series, vol. 5, ed. Randall J. F. Bruins, Matthew T. Heberling, pp. 57-105. CRC Press, Boca Raton, FL.
Evans NR, DL Woodruff, and VL Trainer. 2005. "Development of coastal upwelling edge detection algorithms associated with harmful algal blooms off the Washington coast using sea surface temperature imagery." In Remote sensing of the coastal oceanic environment: 31 July-1 August, 2005, San Diego, California, USA ; Proceedings of SPIE--the International Society for Optical Engineering, vol. 5885, ed. R.J. Frouin, M. Babin, Shubha Sathyendranath, p. 58850L. International Society for Optical Engineering, Bellingham, WA.
Geist DR, RS Brown, VI Cullinan, SR Brink, KB Lepla, P Bates, and JA Chandler. 2005. "Movement, swimming speed, and oxygen consumption of juvenile white sturgeon in response to changing flows, water temperatures, and light level in the Snake River, Idaho." Transactions of the American Fisheries Society 134(4):803-816.
Johnson GE, SM Anglea, NS Adams, and TO Wik. 2005. "Evaluation of a Prototype Surface Flow Bypass for Juvenile Salmon and Steelhead at the Powerhouse of Lower Granite Dam, Snake River, Washington, 1996-2000." North American Journal of Fisheries Management 25(1):138-151. doi:10.1577/M04-024.1
May CW, and VI Cullinan. 2005. An Analysis of Microbial Pollution in the Sinclair-Dyes Inlet Watershed. PNNL-15373, Pacific Northwest National Laboratory, Richland, WA.
Rakowski CL, MC Richmond, JA Serkowski, and GE Johnson. 2005. Forebay Computational Fluid Dynamics Modeling for The Dalles Dam to Support Behavior Guidance System Siting Studies. PNNL-15689, Pacific Northwest National Laboratory, Richland, WA.
Williams GD, NP Kohn, WH Pearson, and JR Skalski. 2005. Impacts to Dungeness Crab from the Southwest Washington Littoral Drift Restoration Project. PNNL-15385, Pacific Northwest National Laboratory, Richland, WA.
Gray JE, DL Fey, CW Holmes, and BK Lasorsa. 2005. "Historical deposition and fluxes of mercury in Narraguinnep Reservoir, southwestern Colorado,USA." Applied Geochemistry 20(1):207-220.
Hasselbach L, JM Ver Hoef, J Ford, P Neitlich, EA Crecelius, SD Berryman, B Wolk, and T Boehle. 2005. "Spatial patterns of cadmium and lead deposition on and adjacent to National Park Service lands in the vicinity of Red Dog Mine, Alaska." Science of the Total Environment 348:211-230.
Huesemann MH, TS Hausmann, and TJ Fortman. 2005. "Leaching of BTEX from Aged Crude Oil Contaminated Model Soils: Experimental and Modeling Results ." Soil & Sediment Contamination 14:545-558.
Johnson GE, ME Hanks, F Khan, CB Cook, J Hedgepeth, RP Mueller, CL Rakowski, MC Richmond, SL Sargeant, JA Serkowski, and JR Skalski. 2005. Hydroacoustic Evaluation of Juvenile Salmonid Passage at The Dalles Dam in 2004. PNNL-15180, Pacific Northwest National Laboratory, Richland, WA.
Khangaonkar TP, Z Yang, C DeGasperi, and K Marshall. 2005. "Modeling Hydrothermal Response of a Reservoir to Modifications at a High-Head Dam." Water International 30(3):378-388.
Lee RF, and JW Anderson. 2005. "Significance of Cytochrome P450 System Responses and Levels of Bile Fluorescent Aromatic Compounds in Marine Wildlife Following Oil Spills." Marine Pollution Bulletin 50(7):705-723.
Saghir SA, and IR Schultz. 2005. "Toxicokinetics and Oral Bioavailability of Halogenated Acetic Acids Mixtures in Naive and GSTzeta-Depleted Rats." Toxicological Sciences 84(2):214-224.
Thom RM, GD Williams, AB Borde, JA Southard, SL Sargeant, DL Woodruff, JC Laufle, and S Glasoe. 2005. "Adaptively Addressing Uncertainty in Estuarine and Near Coastal Restoration Projects." Journal of Coastal Research. JCR 40(sp. iss.):94-108.
Thom RM, GD Williams, and HL Diefenderfer. 2005. "Balancing the Need to Develop Coastal Areas with the Desire for an Ecologically Functioning Coastal Environment: Is Net Ecosystem Improvement Possible?" Restoration Ecology 13(1):193-203. doi:10.1111/j.1526-100X.2005.00024.x
Tsuji JS, MD Van Kerkhove, R Kaetzel, C Scrafford, P Mink, LM Barraj, EA Crecelius, and M Goodman. 2005. "Evaluation of Exposure to Arsenic in Residential Soil." Environmental Health Perspectives 113(12):1735-1740. doi:10.1289/ehp.8178
Wunschel DS, IR Schultz, AD Skillman, and KL Wahl. 2005. "Method for Detection and Quantitation of Fathead Minnow Vitellogenin (Vtg) by Liquid Chromatography and Matrix Assisted Laser Desorption/ Ionization Mass Spectrometry ." Aquatic Toxicology 73:256-267.

2004

Brandenberger JM, P Louchouarn, B Herbert, and P Tissot. 2004. "Geochemical and hydrodynamic controls on arsenic and trace metal cycling in a seasonally stratified US sub-tropical reservoir." Applied Geochemistry 19(10):1601-1623.
Diefenderfer HL, SL Sargeant, RM Thom, AB Borde, PF Gayaldo, CA Curtis, BL Court, DM Pierce, and DS Robison. 2004. "Demonstration Dock Designed to Benefit Eelgrass Habitat Restoration (Washington)." Ecological Restoration 22(2):140-141.
Huesemann MH. 2004. "Biodegradation and Bioremediation of Petroleum Pollutants in Soil." Chapter 2 in Applied Bioremediation and Phytoremediation , vol. 1, Soil Biology Series, ed. A. Singh, O.P. Ward, pp. 13-34. Springer Verlag, Berlin Heidelberg, Germany.
Huesemann MH. 2004. "The Failure of Eco-Efficiency to Guarantee Sustainability: Future Challenges for Industrial Ecology." Environmental Progress 23(4):264-270.
Johnson GE, J Hedgepeth, JR Skalski, and AE Giorgi. 2004. "A Markov Chain Analysis of Fish Movements to Determine Entrainment Zones ." Fisheries Research 69(3):349-358.
Kropp RK. 2004. Review of Deep-Sea Ecology and Monitoring as They Relate to Deep-Sea Oil and Gas Operations. PNNL-14540, Pacific Northwest National Laboratory, Richland, WA.
May CW, MC Miller, and JA Southard. 2004. An Analysis of Stream Culvert Fish Passage on the Navy Railroad Line between Bremerton and Shelton, Washington. PNNL-14530, Pacific Northwest National Laboratory, Richland, WA.
Brenner RC, VS Magar, JA Ickes, EA Foote, JE Abbott, LS Bingler, and EA Crecelius. 2004. "Long-Term Recovery of PCB-Contaminated Surface Sediments at the Sangamo-Weston / Twelvemile Creek / Lake Hartwell Superfund Site." Environmental Science and Technology 38(8):2328-2337.
Huesemann MH, TS Hausmann, and TJ Fortman. 2004. "Does Bioavailability Limit Biodegradability? A Comparison of Hydrocarbon Biodegradation and Desorption Rates in Aged Soils." Biodegradation 15(4):261-274.
Keys DA, IR Schultz, DA Mahle, and JW Fisher. 2004. "A Quantitative Description of Suicide Inhibition of Dichloroacetic Acid in Rats and Mice." Toxicological Sciences 82(2):381-393.
Kohn NP, MC Miller, JM Brandenberger, and RK Johnston. 2004. Metals Verficiation Study for Sinclair and Dyes Inlets,Washington . PNNL-14872, Pacific Northwest National Laboratory, Richland, WA.
Kohn NP, and NR Evans. 2004. Year 6 Post-Remediation Biomonitoring and Phase II Source Investigation at the United Heckathorn Superfund Site, Richmond, California. PNNL-14596, Pacific Northwest National Laboratory, Richland, WA.
Malins DC, JJ Stegeman, JW Anderson, PM Johnson, J Gold, and KM Anderson. 2004. "Structural Changes in Gill DNA Reveal the Effects of Contaminants on Puget Sound Fish." Environmental Health Perspectives 112(5):511-515.
Neff JM, PD Boehm, RK Kropp, WA Stubblefield, and DS Page. 2004. "Monitoring Recovery of Prince William Sound, Alaska, Following the Exxon Valdez Oil Spill: Bioavailability of PAH in Offshore Sediments." In 2005 International Oil Spill Conference prevention, preparedness, response, and restoration: May 15-19, 2005, Miami Beach Convention Center, Miami Beach, Florida, pp. 9562-9568. American Petroleum Institute, Washington, DC.
Williams GD, WH Pearson, NR Evans, and MG Anderson. 2004. Benson Beach Demonstration Project: Composition and Abundance of Biota at Three Alternative Sump Sites. PNNL-14522, Pacific Northwest National Laboratory, Richland, WA.

2003

Anderson JW, JM Jones, DL McCoy, A Fujita, T Yamamoto, and S Iijima. 2003. "Comparison Between a Rapid Biological Screening Method (EPA 4425) for TCDDs/TCDFs and Chemical Analytical Methods." Chapter Organohalogen Compounds in Proceedings to Dioxin 2003: The 23rd International Symposium on Halogenated Environmental Organic Pollutants and Persistent Organic Pollutants published in Organohalogen Compounds Vol. 60 , vol. 60, pp. 271-274. Eco Informa Press, Bayreuth, Germany.
Borde AB, RM Thom, S Rumrill, and LM Miller. 2003. "Geospatial Habitat Analysis in Pacific Northwest Coastal Estuaries." Estuaries 26(4B):1104-1116.
Huesemann MH. 2003. "Recognizing the Limits of Environmental Science and Technology." Environmental Science and Technology 37(13):259A-261A.
Johnson GE, BD Ebberts, DD Dauble, AE Giorgi, PG Heisey, RP Mueller, and DA Neitzel. 2003. "Effects of Jet Entry at High-Flow Outfalls on Juvenile Pacific Salmon." North American Journal of Fisheries Management 23(2):441-449.
Schultz IR, AD Skillman, JM Nicolas, DG Cyr, and JJ Nagler. 2003. "Short-term exposure to 17alpha-ethynylestradiol decreases the fertility of sexually maturing male rainbow trout (Oncorhynchus mykiss)." Environmental Toxicology and Chemistry 22(6):1272-1280.
Allen-Gil SM, J Ford, BK Lasorsa, M Monetti, T Vlasova, and DH Landers. 2003. "Heavy Metal Contamination in the Taimyr Peninsula, Siberian Arctic." Science of the Total Environment 301:119-138.
Geist DR, RS Brown, VI Cullinan, MG Mesa, SP VanderKooi, and CA McKinstry. 2003. "Relationships Between Metabolic Rate, Muscle Electromyograms and Swim Performance of Adult Chinook Salmon." Journal of Fish Biology 63(4):970-989.
Geist DR, RS Brown, VI Cullinan, MG Mesa, SP VanderKooi, and CA McKinstry. 2003. "Relationships between metabolic rate, muscle electromyograms, and swim performance of adult chinook salmon." Journal of Fish Biology 63(4):970-989.
Goward SN, PE Davis, D Fleming, LM Miller, and JR Townshend. 2003. "Empirical comparison of Landsat 7 and IKONOS multispectral measurements for selected Earth Observation System (EOS) validation sites." Remote Sensing of Environment 88(1-3):80-99.
Gray JE, ME Hines, H Biester, and BK Lasorsa. 2003. "Mercury Methylation in Mine Wastes Collected from Abandoned Mercury Mines in the USA." Journal de physique IV 107:573-576.
Holt AC, RP Stumpf, MC Tomlinson, V Ransibrahmanakul, VL Trainer, and DL Woodruff. 2003. "Applications of Satellite Ocean Color Imagery for Detecting and Monitoring Harmful Algal Blooms in the Olympic Peninsula Region." In Coastal Zone 03: Proceedings of the 13th Biennial Coastal Zone Conference, Baltimore MD, July 13-17, 2003., no. NOAA/CSC/20322-CD, NOAA Coastal Services Center, Charleston, SC.
Huesemann MH, TS Hausmann, and TJ Fortman. 2003. "Assessment of Bioavailability Limitations During Slurry Biodegradation of Petroleum Hydrocarbons in Aged Soils." Environmental Toxicology and Chemistry 22(12):2853-2860.
Huesemann MH, TS Hausmann, and TJ Fortman. 2003. "Biodegradation of Hopane Prevents Use As Conservative Biomarker During Bioremediation of PAHs in Petroleum Contaminated Soils." Bioremediation Journal 7(2):111-117.
Johnson GE, RM Thom, AH Whiting, GB Sutherland, TJ Berquam, B Ebberts, NM Ricci, JA Southard, and JD Wilcox. 2003. An Ecosystem-Based Restoration Plan with Emphasis on Salmonid Habitats in the Lower Columbia River and Estuary. PNNL-14412, Pacific Northwest National Laboratory, Richland, WA.
Paulay G, RK Kropp, PK Ng, and LG Eldredge. 2003. "The crustaceans and pycnogonids of the Mariana Islands." Micronesica 35-36:456-517.
Pearson WH, GD Williams, and JR Skalski. 2003. Estimated Entrainment of Dungeness Crab During Maintenance Dredging of the Mouth of the Columbia River, Summer 2002. PNNL-14190, Pacific Northwest National Laboratory, Richland, WA.
Powell DB, RC Palm, AD Skillman, and K Godtfredsen. 2003. "Immunocompetence of Juvenile Chinook Salmon Against Listonella anguillarum Following Dietary Exposure to Aroclor (R) 1254." Environmental Toxicology and Chemistry 22(2):285-295.
Rios AF, XA Alvarez-Salgado, FF Perez, LS Bingler, J Aristegui, and L Memery. 2003. "Carbon dioxide along WOCE line A14: Water masses characterization and anthropogenic entry." Journal of Geophysical Research. C. (Oceans) 108(c4):, doi:10.1029/200JC000366
Thom RM, AB Borde, S Rumrill, DL Woodruff, GD Williams, JA Southard, and SL Sargeant. 2003. "Factors Influencing Spatial and Annual Variability in Eelgrass (Zostera marina L.) Meadows in Willapa Bay, Washington, and Coos Bay, Oregon, Estuaries." Estuaries 26(4B):1117-1129.
West JM, GD Williams, SP Madon, and JB Zedler. 2003. "Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary." Environmental Biology of Fishes 67:297-309.

2002

Pearson WH, MC Richmond, and J Schafer. 2002. "Culvert Testing Program for Juvenile Salmonid Passage." In Proceedings of the International Conference on Ecology and Transportation, Keystone, CO, September 24-28, 2001. , pp. 92-97. NC State University, Center for Transportation and the Environment, Raleigh, NC.
Schultz IR, JL Merdink, A Gonzalez-Leon, and RJ Bull. 2002. "Dichloroacetate toxicokinetics and disruption of tyrosine catabolism in B6C3F1 mice: dose-response relationships and age as a modifying factor ." Toxicology (173):229-247.
Blanton SL, RM Thom, AB Borde, HL Diefenderfer, and JA Southard. 2002. Evaluation of Methods to Increase Light Under Ferry Terminals. PNNL-13714, Pacific Northwest National Laboratory, Richland, WA.
Brenner RC, VS Magar, JA Ickes, JE Abbott, SA Stout, EA Crecelius, and LS Bingler. 2002. "Characterization and Fate of PAH-contaminated Sediments at the Wyckoff/Eagle Harbor Superfund Site." Environmental Science and Technology 36(12):2605-2613.
Gray JE, JG Crock, and BK Lasorsa. 2002. "Mercury Methylation at Mercury Mines In The Humboldt River Basin, Nevada, USA." Geochemistry. Exploration, Environment, and Analysis 2(2):143-149.
Hedgepeth J, GE Johnson, JR Skalski, and J Burczynski. 2002. "Active Fish Tracking Sonar (AFTS) for Assessing Fish Behaviour." In European Conference on Underwater Acoustics, published in "Acta Acustica United with Acustica", vol. 88, no. 5, pp. 739-742. S. Hirzel Verlag, Stuttgart, Germany.
Huesemann MH, AD Skillman, and EA Crecelius. 2002. "The Inhibition of Marine Nitrification by Ocean Disposal of Carbon Dioxide." Marine Pollution Bulletin 44(2):142-148.
Huesemann MH, TS Hausmann, and TJ Fortman. 2002. "Microbial Factors Rather Than Bioavailability Limit the Rate and Extent of PAH Biodegradation in Aged Crude Oil Contaminated Model Soils." Bioremediation Journal 6(4):321-336.
Johnson RL, MA Simmons, CS Simmons, and SL Blanton. 2002. "A New Multibeam Sonar Technique for Evaluating Fine-Scale Fish Behavior Near Hydroelectric Dam Guidance Structures." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, 2001, vol. 26, no. 2001, ed. Coutant, C., pp. 161-170. Amer. Fisheries Society, Bethesda, MD.
Kohn NP, and NR Evans. 2002. Phase I Source Investigation, Heckathorn Superfund Site, Richmond, California. PNNL-14088, Pacific Northwest National Laboratory, Richland, WA.
Kohn NP, and RK Kropp. 2002. Year 5 Post-Remediation Biomonitoring of Pesticides and other Contaminants in Marine Waters near the United Heckathorn Superfund Site, Richmond, California. PNNL-13990, Pacific Northwest National Laboratory, Richland, WA.
Miller MC, GD Williams, LK O'Rourke, JA Southard, and SL Blanton. 2002. Effects of Shoreline Hardening and Shoreline Protection Features on Fish Utilization and Behavior at Washaway Beach, Washington (Report 2). PNNL-13635-(2), Pacific Northwest National Laboratory, Richland, WA.
Saghir SA, and IR Schultz. 2002. "Low-Dose Pharmacokinetics and Oral Bioavailability of Dichloroacetate in Naive and GST-zeta Depleted Rats." Environmental Health Perspectives 110(8):757-763.
Steimle F, KL Foster, RK Kropp, and B Conlin. 2002. "Benthic macrofauna productivity enhancement by an artificial reef in Delaware Bay, USA." ICES Journal of Marine Science 59:S100-S105 Suppl. S OCT 2002.
Thom RM, R Zeigler, and AB Borde. 2002. "Floristic Development Patterns in a Restored Elk River Estuarine Marsh, Grays Harbor, Washington." Restoration Ecology 10(3):487-496.
Thom RM, SL Blanton, AB Borde, GD Williams, DL Woodruff, and MH Huesemann. 2002. "Investigations into Wetland Carbon Sequestration as Remediation for Global Warming ." In International Conference on Wetlands and Remediation; Wetlands and Remediation II, ed. KW Nehring and SE Brauning, pp. 311-320. Battelle Press, Columbus, OH.

2001

Huesemann MH. 2001. "Can Pollution Problems Be Effectively Solved by Environmental Science and Technology? An Analysis of Critical Limitations." Ecological Economics 37(2):271-287.
Kohn NP, and R Kropp. 2001. Year 4 Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters Near the United Heckathorn Superfund Site, Richmond, California. PNNL-13632, Pacific Northwest National Laboratory, Richland, WA.
Kohn NP, and TJ Gilmore. 2001. Field Investigation to Determine the Extent of Sediment Recontamination at the United Heckathorn Superfund Site, Richmond, California. PNNL-13730, Pacific Northwest National Laboratory, Richland, WA.
Patton GW, and EA Crecelius. 2001. Simultaneously Extracted Metals/Acid-Volatile Sulfide and Total Metals in Surface Sediment from the Hanford Reach of the Columbia RIver and the Lower Snake River. PNNL-13417, Pacific Northwest National Laboratory, Richland, WA.
Schultz IR, and SR Sylvester. 2001. "Stereospecific Toxicokinetics of Bromochloro- and chlorofluoroacetate: Effect of GST-zeta Depletion." Toxicology and Applied Pharmacology 175(2):104-113.
Schultz IR, GA Orner, JL Merdink, and AD Skillman. 2001. "Dose-response relationships and pharmacokinetics of vitellogenin in rainbow trout after intravascular administration of 17 alpha-ethynylestradiol ." Aquatic Toxicology 51(3):305-318.
Williams GD, NR Evans, WH Pearson, and JA Southard. 2001. Assessing Juvenile Salmonid Passage Through Culverts: Field Research in Support of Protocol Development. PNNL-13708, Pacific Northwest National Laboratory, Richland, WA.
Adams N, GE Johnson, DW Rondorf, SM Anglea, and TO Wik. 2001. "Biological Evaluation of the Behavioral Guidance Structure at Lower Granite Dam on the Snake River, Washington in 1998." In Behavioral Technologies for Fish Guidance, American Fisheries Society Symposium, vol. 26, pp. 145-160. American Fisheries Society, Bethesda, MD.
Clements W, SN Luoma, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Stressor Interactions in Ecological Systems ." Chapter 7 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 215-233. SETAC Press, Pensacola, FL.
Huesemann MH, TS Hausmann, and TJ Fortman. 2001. "Assessment of mass-transfer limitations during slurry bioremediation of PAHs and alkanes in aged soils." In Bioremediation Of Energetics, Phenolics, And Polycyclic Aromatic Hydrocarbons: the Sixth International In Situ and On-Site Bioremediation Symposium, San Diego, California, June 4-7, 2001, vol. 3, pp. 157-163. Battelle Press, Columbus, OH.
Luoma SN, W Clements, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Separating stressor influences from environmental variability: eight case studies from aquatic and terrestrial ecosystems." Chapter 6 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 179-215. SETAC Press, Pensacola, FL.
Luoma SN, W Clements, T Dewitt, J Gerritsen, A Hatch, P Jepson, T Reynoldson, and RM Thom. 2001. "Role of Environmental Variability in Evaluating Stressor Effects." Chapter 5 in Ecological Variability: Separating Natural from Anthropogenic Causes of Ecosystem Impairment, ed. Donald J. Baird and G. Allen Burton, Jr., pp. 141-179. SETAC Press, Pensacola, FL.
Madon SP, GD Williams, JM West, and JB Zedler. 2001. "The importance of marsh access to growth of the California killifish, Fundulus parvipinnis, evaluated through bioenergetics modeling." Ecological Modelling 136(2-3):149-165.
Merdink JL, RJ Bull, and IR Schultz. 2001. "Toxicokinetics of Bromodichloroacetate in B6C3F1 mice." Journal of Applied Toxicology 21(1):53-57.
Paluszkiewicz T, LF Hibler, MC Richmond, DJ Bradley, and SA Thomas. 2001. "Modeling the Potential Radionuclide Transport by the Ob and Yenisey Rivers to the Kara Sea." Marine Pollution Bulletin 43(1-6):111-121.
Riley RG, CJ Thompson, MH Huesemann, Z Wang, BM Peyton, TJ Fortman, MJ Truex, and KE Parker. 2001. "Artificial Aging of Phenanthrene in Porous Silicas Using Supercritical Carbon Dioxide." Environmental Science and Technology 35(18):3707-3712.
Thom RM, AB Borde, KO Richter, and LF Hibler. 2001. "Influence of Urbanization on Ecological Processes in Wetlands ." In Land Use and Watersheds : Human Influence on Hydrology and Geomorphology in Urban and Forest Areas. Water Science and Application, vol. 2, ed. Mark Wigmosta and Stephen Burges, pp. 5-16. American Geophysical Union, Washington, DC.
Thom RM, AB Borde, GD Williams, JA Southard, SL Blanton, and DL Woodruff. 2001. "Effects of Multiple Stressors on Eelgrass Restoration Projects." In Proceedings of Puget Sound Research 2001, the fifth Puget Sound Research Conference, vol. 1, ed. Droscher, Toni. Puget Sound Water Quality Action Team, Olympia, WA.
Wang Z, D Friedrich, MR Beversluis, SL Hemmer, AG Joly, MH Huesemann, MJ Truex, RG Riley, CJ Thompson, and BM Peyton. 2001. "A Fluorescence Spectroscopic Study of Phenanthrene Sorbed on Porous Silica." Environmental Science and Technology 35(13):2710-2716.

2000

Geist DR, CS Abernethy, SL Blanton, and VI Cullinan. 2000. "The use of electromyogram telemetry to estimate energy expenditure of adult fall chinook salmon." Transactions of the American Fisheries Society 129(1):126-135.
Johnson GE, NS Adams, RL Johnson, DW Rondorf, DD Dauble, and TY Barila. 2000. "Evaluation of the Prototype Surface Bypass for Salmonid Smolts in Spring 1996 and 1997 at Lower Granite Dam on the Snake River, Washington." Transactions of the American Fisheries Society 129(2):381-397.
Thom RM. 2000. "Adaptive management of coastal ecosystem restoration projects." Ecological Engineering 15(3-4):365-372.
Antrim LD, and NP Kohn. 2000. Post-Remediation Biomonitoring of Pesticides and Other Contaminants in Marine Waters and Sediment Near the United Heckathorn Superfund Site, Richmond, California. PNNL-13059, Pacific Northwest National Laboratory, Richland, WA.
Barron MG, IR Schultz, and ME Newman. 2000. "Pharmacokinetics of Intravascularly Administered (65)Zinc in Channel Catfish (Ictalurus punctatus) ." Ecotoxicology and Environmental Safety 45(3):304-309.
Johnson RL, and GE Johnson. 2000. "Fish Behavior Relative to a Prototype Surface Bypass and Collector (SBC) at Lower Granite Dam Using Innovative Hydroacoustic Techniques." In Advances in Fish Passage Technology, ed. Mufeed Odeh, pp. 57-67. American Fisheries Society, Bethesda, MD.
Merdink JL, RJ Bull, and IR Schultz. 2000. "Trapping and Identification of the Dichloroacetate Radical from the Reductive Dehalogenation of Trichloroacetate by Mouse and Rat Liver Microsomes." Free Radical Biology & Medicine 29(2):125-130.
Trainer VL, NG Adams, BD Bill, CM Stehr, JC Wekell, P Moeller, M Busman, and DL Woodruff. 2000. "Domoic acid production near California coastal upwelling zones, June 1998." Limnology and Oceanography 45(8):1818-1833.
Woodruff DL, PJ Farley, AB Borde, JA Southard, and RM Thom. 2000. King County Nearshore Habitat Mapping Data Report: Picnic Point to Shilshole Bay Marina . PNNL-13396, Pacific Northwest National Laboratory, Richland, WA.

1999

Schultz IR, and WL Hayton. 1999. "Predicting the Toxicokinetics of Trifluralin in Rainbow Trout Using Clearance-Volume Pharmacokinetic Models." In Xenobiotics in Fish, vol. VIII, ed. David J.Smith, William H.Gingerich, Maria G.Barker , pp. 133-148. Kluwer Academic/Plenum Publishers, New York, NY.
Bloom NS, and BK Lasorsa. 1999. "Changes in mercury speciation and the release of methyl mercury as a result of marine sediment dredging activities." Science of the Total Environment 238(special issue):379-385.
Crecelius EA, LF Lefkovitz, and VI Cullinan. 1999. "The Sound is Cleaner: A Century of Contaminant Trends Observed from Dated Cores." In Oceans'99 MTS/IEEE Proceedings. Riding the Crest into the 21st Century., vol. 3, pp. 1381-1394. Oceans '99 MTS/IEEE Conference Committee, Piscataway, NJ.
Nassar AF, SV Lucas, and SA Thomas. 1999. "Determination of O-isopropyl methylphosphonic acid in living microorganism-agar matrixes using ion chromatography conductivity detection." Analytical Letters 32(5):1023-1035.
Valette-Silver NJ, GF Riedel, EA Crecelius, H Windom, RG Smith, and SS Dolvin. 1999. "Elevated arsenic concentrations in bivalves from the southeast coasts of the USA." Marine Environmental Research 48(4-5):311-333.

1998

Pearson WH, SM Al-Ghais, JM Neff, CJ Brandt, KF Wellman, and T Green. 1998. "Assessment of Damages to Commercial Fisheries and Marine Environment of Fujairah, United Arab Emirates, Resulting from the Seki Oil Spill of March 1994: A Case Study." In Transformations of Middle Eastern Natural Environments: Legacies and Lessons, Bulletin series, vol. 103, pp. 407-428. Yale School of Forestry & Environmental Studies, New Haven, CT.
Randolph RC, JT Hardy, SW Fowler, ARG Price, and WH Pearson. 1998. "Toxicity and Persistence of Nearshore Sediment Contamination Following the 1991 Gulf War." Environment International 24:33-42.